Add Dockerfile

Dockerfile

@@ -1,14 +1,16 @@
-# set base image
 FROM python:3.7-slim
 
-# set the working directory in the container
-WORKDIR /app
+ENV PATH="~/.local/bin:${PATH}"
+ENV PATH="/home/testuser/.local/bin:${PATH}"
 
-# install fawkes
-RUN pip install fawkes
-
-# downgrade h5py: https://github.com/Shawn-Shan/fawkes/issues/75
-RUN pip install --upgrade h5py==2.10.0
-
-# copy the files you want to edit with fawkes
-COPY imgs imgs
+#Mirror host user
+#Efficently mirror host user and share files between host and docker
+#https://stackoverflow.com/a/44683248/298240
+ARG UNAME=testuser
+ARG UID=1000
+ARG GID=1000
+#FIXES https://stackoverflow.com/a/63377623/298240
+RUN apt-get update && apt-get install -y ffmpeg libsm6 libxext6 python3-opencv sudo && groupadd -g $GID -o $UNAME && useradd -m -u $UID -g $GID -o -s /bin/bash $UNAME && echo "testuser:testuser" | chpasswd && adduser testuser sudo
+USER $UNAME
+WORKDIR /home/$UNAME/workspace
+RUN pip install --upgrade h5py==2.10.0 fawkes opencv-python

README.md

@@ -64,15 +64,14 @@ If you don't have root privilege, please try to install on user namespace: `pip
 
 ## Installation and Usage with Docker
 
-- clone this repository: `git clone [url]`
+- On your host machine move or copy your images folder to your normal workspace directory `cd ~/workspace`
+- clone this repository: `git clone [url]` into your normal workspace directory
 - go into cloned repository: `cd fawkes`
-- create `/imgs` folder in root folder: `mkdir imgs`
-- build docker image in root folder: `docker build -t fawkes .`
-- run container: `docker run -it fawkes sh`
-- run your fawkes command, e.g. `fawkes -d ./imgs --mode min`
+- run `buildDocker.sh`
+- run `startDocker.sh`
+- You should now be in the fawkes container with your normal workspace directory to /home/testuser/workspace
+- You can then run fawkes with something like: e.g. `fawkes -d ./imgs --mode=low`
 - exit from your container: `exit`
-- find your container id: `docker container ls --all`
-- copy the created data to your local machine: `docker cp [container-id]:/app/imgs ~/output-from-fawkes`
 
 Academic Research Usage
 -----------------------

buildDocker.sh

@@ -0,0 +1,5 @@
+#Pass in user id's for mirroring host user
+docker build \
+  --build-arg UID=$(id -u) \
+  --build-arg GID=$(id -g) \
+  -t fawkes .

startDocker.sh

@@ -0,0 +1,2 @@
+#Map Parrent directory to workspace folder under home directory
+docker run -it -v "$(pwd)/..:/home/testuser/workspace" fawkes bash